Sam, the pickup is mounted in the tray with 1/4" thick foam, and you will note that it will move slightly when you press on it in any direction. The cavity in the neck is quite small, but the pickup could be removed and remounted slightly more towards the back of the guitar, and this might require you to file or grind the plastic on the bottom cover of the pickup (on the bass side). Not a hard job, but it would require some care and time and removing the strings. I believe the pickup can be raised or lowered (or removed) via the 2 very small slotted brass screws on the bottom of the guitar, about one inch from the fingers. Note, however, that this "adjustment" or filing (should you decide to do that) will still not allow you to have all the strings centered over the poles. It's a design problem that I don't consider a problem, but others might. You might improve the look of things, slightly, but I can't guarantee that will do anything, sound-wise. For reference, below is a (somewhat crappy) picture of the E9th pickup in my 50 year-old MSA. Note that this guitar exhibits
exactly the same issue as yours. However, I played that guitar for 30 years in that condition; doing almost 10,000 gigs and probably did 50 recordings with it. If it had a problem, I either didn't notice it or I adjusted to it.
But before you do any major work, I'd suggest to polish the changer tops a little, put on new strings, and make sure thay are centered on the changer fingers. And if you're using a .011 string for the 3rd, you might try a .0115, which will have a little fuller sound. You could also try lowering the bass side of the pickup al little, to equalize the output balance.
Hope some of this info helps, good luck!
